hard to diagnose if you don't read the posting guide and supply result of
sessionInfo() after the error is thrown.

On Fri, May 21, 2010 at 12:32 PM, James Anderson <janderson_net@yahoo.com>wrote:

> Hi,
>
> I am trying to use qc function to get those quality measures for a bunch of
> U95Av2 cel files. Below is part of my script:
>
> raw.data = ReadAffy(filenames = fn)
> x.mas5 <- call.exprs(raw.data,"mas5",sc = 100)
> qcmas5 = qc(raw.data,x.mas5)
>
> There is some error message below:
>
> Error in FUN(c("AFFX-r2-Ec-bioB-3_at", "AFFX-r2-Ec-bioC-3_at",
> "AFFX-r2-Ec-bioD-3_at",  :
>   subscript out of bounds
> In addition: Warning message:
> In qc.affy(unnormalised, ...) :
>   CDF Environment name ' hgu133acdf ' does not match cdfname ' hgu95av2cdf
> '
>
> Using the same piece of code, it works perfectly for some U133A array. I am
> wondering could anyone tell me how to solve this problem?
>
> Thanks a bunch,
>
> -James
>
>
>
>
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>
>
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