I think that Rredland might help, since BioPAX is RDF. I think the package
even has some BioPAX examples.

Michael

On Wed, May 19, 2010 at 6:26 PM, Paul Shannon
<pshannon@systemsbiology.org>wrote:

> I wish to parse pathways from NCI/Nature Pathway Interaction Database into
> graphNELs.  They are available as BioPAX, with an '.owl' file extension.
>
> Has anybody already done this?  I have a start on the task using the XML
> package, but don't wish to replicate work already done.
>
> Thanks!
>
>  - Paul
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