Dear Kay,

You might want to look at CNVassoc. The method is described here

Gonzalez J, Subirana I, Escaramis G, Peraza S, Caceres A, Estivill X, Armengol 
L. Accounting for uncertainty when assessing association between copy number 
and disease: a latent class model. BMC Bioinformatics 2009; 10:172+.


And the package is available from 


http://www.creal.cat/jrgonzalez/software.htm#ancla-cnvassoc


Best,

R.

On Thursday 13 May 2010 01:33:11 Kay Jaja wrote:
> Hi ,
>  
> I would like to get some inputs on analyzing copy number variants for a
>  case control study. I have never worked with copy number variants before
>  and I was wondering if there are any R packages out there for analyzing
>  copy number variants data and to get me started. I do have cell files from
>  Affymetrix for my cases and controls. 
> I appreciate your inputs and help
> Thanks
> 
> 
> 
> 	[[alternative HTML version deleted]]
> 

-- 
Ramon Diaz-Uriarte
Structural Biology and Biocomputing Programme
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
Phone: +34-91-732-8000 ext. 3019
Fax: +-34-91-224-6972





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