there are various possibilities, but crlmm package does include a vignette
called copynumber.pdf that should be useful.

On Wed, May 12, 2010 at 7:33 PM, Kay Jaja <kjaja27@yahoo.com> wrote:

> Hi ,
>
> I would like to get some inputs on analyzing copy number variants for a
> case control study.
> I have never worked with copy number variants before and I was wondering if
> there are any R packages out there for analyzing
> copy number variants data and to get me started. I do have cell files from
> Affymetrix for my cases and controls.
>
> I appreciate your inputs and help
> Thanks
>
>
>
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