Thanks -- fixed in 1.7.2.

On Wed, May 12, 2010 at 12:55 PM, Steve Lianoglou <
mailinglist.honeypot@gmail.com> wrote:

> One more : sorry for the spam:
>
> On Wed, May 12, 2010 at 3:54 PM, Steve Lianoglou
> <mailinglist.honeypot@gmail.com> wrote:
> > Hi,
> >
> > On Wed, May 12, 2010 at 3:35 PM, Steve Lianoglou
> > <mailinglist.honeypot@gmail.com> wrote:
> >> Hi,
> >>
> >> I think I've found a corner case in the findOverlaps function when you
> are:
> >>
> >> (i) omitting the subject arg
> >> (ii) both ignoreSelf and ignoreRedundant areTRUE
> >> (iii) and only 1 overlap should be returned(?) <-- not sure about this
> one
> >
> > I think adding a judicious ",drop=FALSE]" in line112
> > IntervalTree-utils.R (rev 46808) would solve the problem, ie:
> >
> > mat <- mat[!duplicated(norm_mat),,drop=FALSE]
>
> I guess doing the same on line 108 might be prudent as well.
>
> --
> Steve Lianoglou
> Graduate Student: Computational Systems Biology
>  | Memorial Sloan-Kettering Cancer Center
>  | Weill Medical College of Cornell University
> Contact Info: http://cbio.mskcc.org/~lianos/contact<http://cbio.mskcc.org/%7Elianos/contact>
>
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