Good morning,

I started using Bioconductor about a month ago. I'm working with Affymetrix and Agilent data. I have the entire workflow
and I know how to use the packages for this type of data. Recently I have found some custom Affymetrix data and I don't
know how to process it. I have only an .xls file with the measured genes and a .txt with the clinical information. These two
can be found here http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE5479. Can someone tell me which packages
to use in order to do the background correction, to normalize the data and to do a differential analysis? I also need to do
a hierarchical clustering. If someone could help me I would really appreciate that. 

Thank you,
Oana



      
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