Hi,
I have data (txt & idat) of custom iSelect HD custom array and have the
bpm(bead pool manifest) file and a csv file and would be intrested in
normalizing analyzing.
I have 5105 snp on the array but only 148 are of intrest and there's no way
to subselect the 148 prior normalization in GenomeStudio.
So i would like to do that in R, load the data, subselect snp of intrest
normalize and plot snp clusters.
I take a look at the available packages that handle that (beadarraySNP and
crlmm). crlmm work with infinium 2 but not for the custom array.
Any one have the chance to hande custom iSelect array before or would know
how to do to analyse custom array in bioconductor ?
Thanks in advance for help and suggestion.
Regards,
Ramzi

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