Dear Sean,
Thank you very much! I asked our administrator to fixed the mismatch problem
and now my program runs good. Thank you again
Grace

On Fri, Apr 16, 2010 at 5:49 PM, Sean Davis <seandavi@gmail.com> wrote:

>
>
> On Fri, Apr 16, 2010 at 2:35 AM, <sisitzq@gmail.com> wrote:
>
>> Dear All,
>> I am working on large dataset and need much memory. I use our server which
>> need qsub -q highmem to run R , but I always have the following problem:
>>
>> /cluster/apps/x86_64/packages/R-2.10.1/lib64/R/bin/exec/R: error while
>> loading shared libraries: libgfortran.so.3: cannot open shared object
>> file:
>> No such file or directory
>>
>> I type : grep libgfortran it shows:
>> bash: dpkg: command not found
>>
>> I type: locate libgfortran | grep so It shows:
>> /usr/lib/libgfortran.so.1
>> /usr/lib/libgfortran.so.1.0.0
>> /usr/lib/gcc/x86_64-redhat-linux/4.1.1/libgfortran.so
>> /usr/lib/gcc/x86_64-redhat-linux/4.1.1/32/libgfortran.so
>> /usr/lib64/libgfortran.so.1
>> /usr/lib64/libgfortran.so.1.0.0
>>
>>
>> when I run R on command line or qsub myjob.sh (no -q highmem), my job runs
>> good.
>>
>> Any one can help me? Thanks
>>
>>
> Hi, Grace.  My guess is that the nodes running the highmem queue are
> different from the nodes that run the standard queue and that there is a
> library mismatch between where R was compiled and where it runs when the
> highmem queue is used.  You will probably need to talk to your system
> administrator.
>
> Sean
>

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