I am trying to use "blat-blast like alignment tool" in R. I couldn't find
any package in CRAN or bioconductor. I downloaded the windows executable
from Jim Kent's (from ucsc) webpage. I am wondering how to use/call these
functions embedded in these executables. I have some results in R that would
be input to these executable file and then store and process the output of
these executable file in R.

 I am seeking for some direction or some material that addresses such
problem. I am considering "system()" but I am nor sure how far can I go with
this.

Help appreciated. Thanks


-- 
Fahim Mohammad
CECS, univ  of Louisville

	[[alternative HTML version deleted]]

