Hi Mohamed,

Bioconductor packages are available but depends on the type of experimental protocol followed. If you have followed DMH method, you can use limma, If you have used MeDIP, you can use MEDME. 

There is another package for MeDIP but which do not come under R, that is Batman.

Regards,
Prashantha

Prashantha Hebbar Kiradi,

Manipal University,

Manipal, India


--- On Tue, 4/6/10, Mohamed Lajnef <Mohamed.lajnef@inserm.fr> wrote:

From: Mohamed Lajnef <Mohamed.lajnef@inserm.fr>
Subject: [BioC] Methylation data
To: bioconductor@stat.math.ethz.ch
Date: Tuesday, April 6, 2010, 8:16 AM

Dear All,

I 'am looking for a package in R to analyse methylation databases generated from Agilent CpG Islanfds.
Any help will be appreciated
Regards
Mohamed

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