Dear All,

we would like to use the computeRawQ function, but the documentation is very scarce:

Arguments
fname                    character string with the filename of the GeneChip 
intensity                    vector of intensities for the GeneChip 
probe.index             vector of indices for each probe 
probe.zoneID         vector of zone ID numbers for each probe 
bgCells                    number of background cells for the GeneChip 
NumberZones         number of zones on the GeneChip 
celfile.path                 character denoting the path for the *.CEL files specified in fname
 
However, we cannot run the function based on this description. For example we do not know what are the "background cells" or "number of zones". 

Is there somewhere a detailed description (the whitepaper on the bottom of the page does not deliver any info), or at least a sample application?

Thanks
Balazs
-------------------------
Balázs GYÖRFFY MD, PhD
Joint Research Laboratory of the Hungarian Academy of Sciences
and the Semmelweis University,
Semmelweis University 1st Dept. of Pediatrics
Bokay u. 53-54.
H-1083 Budapest 
Office: +36 1 266 0926 /52772
Fax: +36 1 3036 077
Email: zsalab2@yahoo.com 


      
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