
Hi there,

I am trying to analyze chip-chip data from Nimblegen 385k arrays for histone methylated regions. I have replicates from both wild type and knock out cells with separate inputs (controls) for the KO and WT. That makes a total of 12 arrays. I was wondering if anybody could help me in pointing at the right package or tools. I am new to chip-chip data.

 

Thanks in advance,

Som.
 		 	   		  
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