
Hi,

I am trying to annotate the Nimblegen 385k mm8  refseq promoter chip and the following is what I have been using:

 

> makePDpackage("2006-07-18_MM8_RefSeq_promoter.ndf", "FILE.XYS", "2006-07-18_MM8_RefSeq_promoter.pos",manufacturer="nimblegen", type="expression", genomebuild = "mm8")
nimblegen expression 
The package will be called pd.2006.07.18.mm8.refseq.promoter 
Reading 2006-07-18_MM8_RefSeq_promoter.ndf 
Assuming a simple design (NOT multiple-wells).
Correcting probe positions... Done.
Error in getClass(Class, where = topenv(parent.frame())) : 
  "platformDesign" is not a defined class

 

Could anybody help me out with this? Moreover, is there a way to convert .pair files into .XYS files for nimblegen?

 

Thank so much,

Som.
 		 	   		  
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