Hi All,

I am comparing four RNAseq experiments, exp # 1 and 2 are done using
protocol A and experiment 3 and 4 are done using protocol B. Experiments 1
and 3 are done using stem cells and experiment 2 and 4 are done using neural
cells. I would like to see if there is more variation between the two types
of protocols compared to the two types of cells. I have used the DESEQ
package to plot the squared coefficient of variation against the base mean
but I am wondering if there is a single metric I can use to compare the
variations?

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