
 

Hello,

 

I want to do heteroduplex on each exon of around 50 genes. Getting the exon structure for each gene from Ensembl and manually identifying the exon sequence seems very laborous.

 

Is there a way using Bioconductor package to get the exon sequences for all the transcripts of a gene, if so how can I do this, would biomaRt do it, if so how?

 

Anyway examples of a script or ideas is greatly appreciated as it takes hours to get all the exon sequences for a gene split up into files to use for PCR.

 

thanks in advance for any help on this.

 

Raphael
 		 	   		  
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