Hi all,

Is there a way to fetch genomic sequences via Bioconductor directly? (Using
galaxy, but I would like to automate)

I tried rtracklayer and biomaRt - rtracklayer doesn't seem to have an
interface for fetching sequences, and biomaRt only seems to fetch sequences
from a subset of gene ID's, while I just to need to fetch sequence from a
genomic range.

fetchSequence(chr, strand, start, end) -> sequence

Any suggestions?

Thank you in advance!!

Best regards,
JW,
Uni. of Copenhagen

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