Can anyone help me with this, I cannot recreate a web service on a 2nd
machine?

I've developed and tested an RWebservices based web service on CentOS
release 5.3 (Final) running in a VM on my windows XP box.

However, when I transferred the code to my production machine, CentOS
release 5.4 (Final),  I cannot map the package (e.g. generate Java code).

Other differences between the two setups:

Feature                                   Dev          Production

RWebServices Version       1.8.0      1.10.0

R version                                 2.8.1       2.10.0

 

I've confirmed that my R package is installed and functioning correctly on
both machines.

When I run "ant -Dpkg=natreeV3 map-package" on the production machine, I get
the error message:

"Error in dots[[1L]][[1L]] : subscript out of bounds"

 

Below is the full verbose output of the map-package

--------------------------------------------------------------------

Buildfile: build.xml

 

-user-tuning-properties-exist:

 

-unpack-tuning-properties:

 

map-package:

     [exec] >

     [exec] >             library(RWebServices)

     [exec] Loading required package: SJava

     [exec] Loading required package: TypeInfo

     [exec] Loading required package: tools

     [exec] >             createMap(pkgs="natreeV3",

     [exec] +             generateTests=TRUE,

     [exec] +             outputDirectory="/home/mshipwa1/natreeV3",

     [exec] +             typeMode="javalib",

     [exec] +             deployMode="jms",

     [exec] +             wsdlStyle="WRAPPED",

     [exec] +             wsdlUse="LITERAL",

     [exec] +             extraClasses="",

     [exec] +             pkgRoot="org.bioconductor",

     [exec] +             verbose=TRUE)

     [exec] Loading required package: tree

     [exec] ********************************************

     [exec]  ***   resolve all data type mapping    *****

     [exec]  ********************************************

     [exec] >>>>>> Generate data map for extraClasses:

     [exec] >>>>>> Generate data map for R function:

     [exec] character test1(numeric depth)      data map for:  character

     [exec]     data map for:  numeric

     [exec] >>>>>> Generate data map for R function:

     [exec] list test2(numeric depth)   data map for:  list

     [exec]     data map for:  numeric

     [exec] >>>>>> Generate data map for R function:

     [exec] character naTree5(character dataFileName, numeric ndays, numeric
features, numeric treeDepth)       data map for:  character

     [exec]     data map for:  character

     [exec]     data map for:  numeric

     [exec]     data map for:  numeric

     [exec]     data map for:  numeric

     [exec] >>>>>> Generate data map for R function:

     [exec] list naTree(character dataFileName, numeric ndays, numeric
features, numeric treeDepth)     data map for:  list

     [exec]     data map for:  character

     [exec]     data map for:  numeric

     [exec]     data map for:  numeric

     [exec]     data map for:  numeric

     [exec] ---------------------------------------------------------------

     [exec] [R Type]  =>  [Java Type]  [Java Package]  [R Package]
[TypeGroup]  [R->Java]  [Java->R]

     [exec] ---------------------------------------------------------------

     [exec] ---------------------------------------------------------------

     [exec] ********************************************

     [exec]  ****     resolve function mapping      *****

     [exec]  ********************************************

     [exec] >>>>>> Generate function map for R package:  natreeV3

     [exec] >> (1) java function signature:

     [exec] [[1]]

     [exec] String[] test1(double[] depth)

     [exec] [[2]]

     [exec] Object[] test2(double[] depth)

     [exec] [[3]]

     [exec] String[] naTree5(String[] dataFileName, double[] ndays, double[]
features, double[] treeDepth)

     [exec] [[4]]

     [exec] Object[] naTree(String[] dataFileName, double[] ndays, double[]
features, double[] treeDepth)

     [exec] Error in dots[[1L]][[1L]] : subscript out of bounds

     [exec] Calls: createMap ... .local -> getFunctionDoc -> mapply -> .Call
-> <Anonymous>

     [exec] Execution halted

     [exec] Result: 1

   [delete] Deleting: /home/mshipwa1/natreeV3/null1969125778

 

BUILD SUCCESSFUL

Total time: 2 seconds


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