Hi,

I've been experiencing problems installing the affy package (please  
see output below).  I've installed the latest versions of Biobase and  
affyio already.

Thanks very much!!

Regards,
Dorothy

#############
~/% R CMD INSTALL affy_1.24.2.tar.gz
* Installing to library '/home/dorothyc/R/x86_64-unknown-linux-gnu- 
library/2.8'
* Installing *source* package 'affy' ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
gcc -std=gnu99 -I/projects/tab/linux/x86_64/lib64/R/include - 
DHAVE_ZLIB=1  -I/usr/local/include -I"/home/dorothyc/R/x86_64-unknown- 
linux-gnu-library/2.8/pr
eprocessCore/include"   -fpic  -g -O2 -c chipbackground.c -o  
chipbackground.o
gcc -std=gnu99 -I/projects/tab/linux/x86_64/lib64/R/include - 
DHAVE_ZLIB=1  -I/usr/local/include -I"/home/dorothyc/R/x86_64-unknown- 
linux-gnu-library/2.8/pr
eprocessCore/include"   -fpic  -g -O2 -c getall_locations.c -o  
getall_locations.o
gcc -std=gnu99 -I/projects/tab/linux/x86_64/lib64/R/include - 
DHAVE_ZLIB=1  -I/usr/local/include -I"/home/dorothyc/R/x86_64-unknown- 
linux-gnu-library/2.8/pr
eprocessCore/include"   -fpic  -g -O2 -c mas5calls.c -o mas5calls.o
gcc -std=gnu99 -I/projects/tab/linux/x86_64/lib64/R/include - 
DHAVE_ZLIB=1  -I/usr/local/include -I"/home/dorothyc/R/x86_64-unknown- 
linux-gnu-library/2.8/pr
eprocessCore/include"   -fpic  -g -O2 -c rma2.c -o rma2.o
gcc -std=gnu99 -I/projects/tab/linux/x86_64/lib64/R/include - 
DHAVE_ZLIB=1  -I/usr/local/include -I"/home/dorothyc/R/x86_64-unknown- 
linux-gnu-library/2.8/pr
eprocessCore/include"   -fpic  -g -O2 -c rma_common.c -o rma_common.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o affy.so chipbackground.o  
getall_locations.o mas5calls.o rma2.o rma_common.o -lz
** R
** data
** demo
** inst
** preparing package for lazy loading

Loading required package: Biobase

Welcome to Bioconductor

   Vignettes contain introductory material. To view, type
   'openVignette()'. To cite Bioconductor, see
   'citation("Biobase")' and for packages 'citation(pkgname)'.

Error in importIntoEnv(impenv, impnames, ns, impvars) :
   object ''smoothScatter'' is not exported by 'namespace:graphics'
Calls: <Anonymous> ... loadNamespace -> namespaceImportFrom ->  
importIntoEnv
Execution halted
ERROR: lazy loading failed for package 'affy'
** Removing '/home/dorothyc/R/x86_64-unknown-linux-gnu-library/2.8/affy'
** Restoring previous '/home/dorothyc/R/x86_64-unknown-linux-gnu- 
library/2.8/affy'
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