Dear Bioconductor Helpers,
I was trying to install affycoretools package on my computer but it gives a
series of errors and doesn't install following are the messages:

## I think the error is related to this warning at the time I use
biocLite("affycoretools")

Warning in install.packages(pkgs = pkgs, repos = repos, dependencies =
dependencies,  :
  argument 'lib' is missing: using
'/home/baba/R/x86_64-pc-linux-gnu-library/2.8'
also installing the dependencies ‘GSEABase’, ‘Category’, ‘XML’, ‘RCurl’,
‘GOstats’, ‘biomaRt’

## These are the series of errors in between downloads and other gcc checks

ERROR: configuration failed for package 'XML'

ERROR: configuration failed for package 'RCurl'

Error in loadNamespace(i[[1]], c(lib.loc, .libPaths())) :

ERROR: lazy loading failed for package 'GSEABase'

Error in loadNamespace(i, c(lib.loc, .libPaths())) :

ERROR: lazy loading failed for package 'biomaRt'

ERROR: lazy loading failed for package 'Category'

ERROR: lazy loading failed for package 'GOstats'
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I also tried
>biocLite("XML")

But I get the same set of warnings again.

Any help is appreciated.


Following is my sessionInfo() output:
> sessionInfo()
R version 2.8.1 (2008-12-22)
x86_64-pc-linux-gnu

locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

attached base packages:
[1] splines   tools     stats     graphics  grDevices utils     datasets
[8] methods   base

other attached packages:
 [1] mdssgpexprcdf_1.20.0 limma_2.16.5         simpleaffy_2.18.0
 [4] genefilter_1.22.0    survival_2.34-1      affyPLM_1.18.1
 [7] preprocessCore_1.4.0 gcrma_2.14.1         matchprobes_1.14.1
[10] affy_1.20.2          Biobase_2.2.2

loaded via a namespace (and not attached):
[1] affyio_1.10.1       annotate_1.20.1     AnnotationDbi_1.4.3
[4] DBI_0.2-4           RSQLite_0.7-3

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