Dear John,
 
You could try the seqaln() function in the bio3d library:
http://mccammon.ucsd.edu/~bgrant/bio3d/html/seqaln.html
This makes a multiple alignment using the Muscle software. I think you
need to have Muscle installed on your computer.
 
Regards,
Avril
 
> On Fri, Nov 20, 2009 at 12:52 AM, John Lande <john.lande77 at
gmail.com <https://stat.ethz.ch/mailman/listinfo/bioconductor> > wrote:
> 
> > dear all,
> >
> > is there a an implementation of clustalw in bioconductor?
> >
> >
> >

 


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