
 OPEN NEW CONNECTION ON FILE:   hsa-miR-31_V_MirBase_FastaFiles.txt 

 **** WRITE 3UTR SEQUENCE TO FILE:   hsa-miR-31_V_MirBase_FastaFiles.txt  **** 

Error in getBM(attributes = c("hgnc_symbol", "ensembl_gene_id", "refseq_dna",  : 
  Query ERROR: caught BioMart::Exception::Database: Could not connect to mysql database ensembl_mart_56: DBI connect('database=ensembl_mart_56;host=martdb.ensembl.org;port=5316','anonymous',...) failed: Can't connect to MySQL server on 'martdb.ensembl.org' (110) at /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/Configuration/DBLocation.pm line 98

> sessionInfo()
R version 2.9.0 (2009-04-17) 
x86_64-unknown-linux-gnu 

locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
 [1] microRNA_1.2.0    Rlibstree_0.3-2   gdata_2.4.2       CORNA_1.2        
 [5] XML_2.5-1         GEOquery_2.8.0    RCurl_0.98-1      bitops_1.0-4.1   
 [9] Biostrings_2.12.7 IRanges_1.2.3     biomaRt_2.0.0     Biobase_2.4.1    
[13] JGR_1.6-7         iplots_1.1-3      JavaGD_0.5-2      rJava_0.6-3      

loaded via a namespace (and not attached):
[1] gtools_2.6.1




tutti i telefonini TIM!


	[[alternative HTML version deleted]]

