 Well, it is not a systematic problem. If I restart my code from the element (miRNA) that was being processed when the interruption occurred .. then 
it works. I mean not only that miRNA is correctly processed but other new ones are.
In thys case I can hardly trace back a bug in my code ... which I cannot exclude.
Maura



-----Messaggio originale-----
Da: Wolfgang Huber [mailto:whuber@embl.de]
Inviato: mar 27/10/2009 13.15
A: Sean Davis
Cc: mauede@alice.it; Stefano Rovetta; Bioconductor List
Oggetto: Re: [BioC] BioMart kicks me out every now and then
 


Dear Maura

how do you know it is BioMart and not your own code?

Best wishes
      Wolfgang

-------------------------------------------------------
Wolfgang Huber
EMBL
http://www.embl.de/research/units/genome_biology/huber
-----------------------------------------

Sean Davis ha scritto:
> On Tue, Oct 27, 2009 at 6:12 AM, <mauede@alice.it> wrote:
> 
>> **** CURRENT miRNA BEING PROCESSED:  hsa-miR-548d-5p   ****
>>
>>
>>  OPEN NEW CONNECTION ON FILE:   hsa-miR-548d-5p_V_MirBase_FastaFiles.txt
>>
>>  **** WRITE 3UTR SEQUENCE TO FILE:
>> hsa-miR-548d-5p_V_MirBase_FastaFiles.txt  ****
>> Error in value[[3L]](cond) :
>>  Request to BioMart web service failed. Verify if you are still connected
>> to the internet.  Alternatively the BioMart web service is temporarily down.
>> In addition: Warning message:
>> In if (processed > 0) { :
>>  the condition has length > 1 and only the first element will be used
>> Maura
>>
>>
> Hi, Maura.  Is this email meant as a question or an observation?  If it is
> meant as a question, there is no useful information in this post to allow
> people to help.  You should try to follow the directions in the posting
> guide before posting to the list.
> 
> Sean
> 
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> 
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