I do not have any other information to add. To my experience these interruptions occur randomly. I daresay, perhaps, the connection has a time limit 
or is sensitive to the queries load. 
If a time limit does exist  then I should try to implement some sort of cron process whose feasibility is questionable using a scripting language.
I feel a solution can be found, on part of the code, maybe resorting to some C funtions linked to the R script.
Right now I have a higher priority  task but I will definitely get back to thir problem later on.
Maura 

-----Messaggio originale-----
Da: Sean Davis [mailto:seandavi@gmail.com]
Inviato: mar 27/10/2009 11.45
A: mauede@alice.it
Cc: Bioconductor List; Stefano Rovetta
Oggetto: Re: [BioC] BioMart kicks me out every now and then
 
On Tue, Oct 27, 2009 at 6:12 AM, <mauede@alice.it> wrote:

> **** CURRENT miRNA BEING PROCESSED:  hsa-miR-548d-5p   ****
>
>
>  OPEN NEW CONNECTION ON FILE:   hsa-miR-548d-5p_V_MirBase_FastaFiles.txt
>
>  **** WRITE 3UTR SEQUENCE TO FILE:
> hsa-miR-548d-5p_V_MirBase_FastaFiles.txt  ****
> Error in value[[3L]](cond) :
>  Request to BioMart web service failed. Verify if you are still connected
> to the internet.  Alternatively the BioMart web service is temporarily down.
> In addition: Warning message:
> In if (processed > 0) { :
>  the condition has length > 1 and only the first element will be used
> >
> Maura
>
>
Hi, Maura.  Is this email meant as a question or an observation?  If it is
meant as a question, there is no useful information in this post to allow
people to help.  You should try to follow the directions in the posting
guide before posting to the list.

Sean




tutti i telefonini TIM!


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