Dear useRs,

Is there a possibility in R to go from differentially expressed genes to
transcription factor binding sites (TFBS) that are enriched in the
regulatory regions of the DE genes (comparable to DiRE from Dcode)?
Maybe biomaRt together with a search in TransFac (which is not yet
possible from R) could give a solution...
Doing so, I would like to know whether there are (one or more)
transcription factors, driving the observed differential expression.
Just to be clear, I am not looking for differentially expressed
transcription factors.

Thanks a lot in advance for your help!

Best regards,
An

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