On Wed, Oct 14, 2009 at 4:18 PM, Naomi Altman <naomi@stat.psu.edu> wrote:

> I could not find this package on bioconductor.org.   Thanks to rules about
> software downloads here, it will take a while for me to get R 2.10.0, and I
> would like to have
> a look at the documentation in the meantime.  Where could I find it?
>
>
http://bioconductor.org/packages/2.5/bioc/html/DEGseq.html


>
> At 09:15 AM 10/14/2009, Likun Wang wrote:
>
>> Hi all,
>>    We present a new R package DEGseq for identifying differentially
>> expressed genes from RNA-seq data.The input of DEGseq is uniquely mapped
>> reads from RNA-seq data with a gene annotation of the corresponding
>> genome,
>> or gene (or transcript isoform) expression values provided by other
>> programs. The output of DEGseq includes a text file and an XHTML summary
>> page. The text file contains the expression values for the samples, a
>> P-value and two kinds of Q-values for each gene to denote its expression
>> difference between libraries. Two novel MA-plot based methods along with
>> some existing methods have been integrated into it.
>>
>>    You may access it through the commands:
>>  > source("http://bioconductor.org/biocLite.R")   # R >= 2.10.0
>>  > biocLite("DEGseq")
>>
>>    Comments, questions, etc, are all welcome.
>>     Best regards
>> Likun
>>
>>        [[alternative HTML version deleted]]
>>
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>>
>
> Naomi S. Altman                                814-865-3791 (voice)
> Associate Professor
> Dept. of Statistics                              814-863-7114 (fax)
> Penn State University                         814-865-1348 (Statistics)
> University Park, PA 16802-2111
>
>
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>

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