Hi all,
    We present a new R package DEGseq for identifying differentially
expressed genes from RNA-seq data.The input of DEGseq is uniquely mapped
reads from RNA-seq data with a gene annotation of the corresponding genome,
or gene (or transcript isoform) expression values provided by other
programs. The output of DEGseq includes a text file and an XHTML summary
page. The text file contains the expression values for the samples, a
P-value and two kinds of Q-values for each gene to denote its expression
difference between libraries. Two novel MA-plot based methods along with
some existing methods have been integrated into it.

    You may access it through the commands:
 > source("http://bioconductor.org/biocLite.R")   # R >= 2.10.0
 > biocLite("DEGseq")

    Comments, questions, etc, are all welcome.
     Best regards
Likun

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