Dear all

I have a general question. I am working on an experiment where the gene-set
of interest is spread out over 4 arrays.

Hence I think I have a three-fold multiple testing problem,
on gene level, on contrast level (contrasts between conditions) and on array
level.

If I just apply the same strategy as e.g. method "global" in decideTests,
( appending all p-values from all the contrasts over all 4 arrays and then
apply
an appropriate p.adjust method), I suppose it will be far too conservative.

I would appreciate any comments or experiences,

Best
Tefina

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