Dear Jim,
That was beautiful. Thanks!

Priscila



On Fri, Sep 4, 2009 at 3:18 PM, James W. MacDonald <jmacdon@med.umich.edu>wrote:

> a <- heatmap(as.matrix(mtcars))
> > rev(row.names(mtcars)[a$rowInd])
>  [1] "Toyota Corona"       "Porsche 914-2"       "Datsun 710"
>  [4] "Volvo 142E"          "Merc 230"            "Lotus Europa"
>  [7] "Merc 280"            "Merc 280C"           "Mazda RX4 Wag"
> [10] "Mazda RX4"           "Merc 240D"           "Ferrari Dino"
> [13] "Fiat 128"            "Fiat X1-9"           "Toyota Corolla"
> [16] "Honda Civic"         "Merc 450SL"          "Merc 450SE"
> [19] "Merc 450SLC"         "Dodge Challenger"    "AMC Javelin"
> [22] "Hornet 4 Drive"      "Valiant"             "Duster 360"
> [25] "Camaro Z28"          "Ford Pantera L"      "Pontiac Firebird"
> [28] "Hornet Sportabout"   "Cadillac Fleetwood"  "Lincoln Continental"
> [31] "Chrysler Imperial"   "Maserati Bora"
>
> Best,
>
> Jim
>
>
>
> Priscila Grynberg wrote:
>
>> Dear BioCs,
>> I'd like to know how can I obtain the list of genes in the same order as
>> heatmap clustered them. I used heatmap() function. And I can't read the
>> row
>> names.
>>
>> I read about RowInd and order.dendrogram(), but with no success at all.
>>
>> Thanks.
>>
>>
>>
>> ------------------------------------------------------------------------
>>
>> _______________________________________________
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>> Bioconductor@stat.math.ethz.ch
>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>> Search the archives:
>> http://news.gmane.org/gmane.science.biology.informatics.conductor
>>
>
> --
> James W. MacDonald, M.S.
> Biostatistician
> Douglas Lab
> University of Michigan
> Department of Human Genetics
> 5912 Buhl
> 1241 E. Catherine St.
> Ann Arbor MI 48109-5618
> 734-615-7826
>



-- 
Priscila Grynberg, B.Sc., M.Sc.
Doutoranda em Bioinformática (Bioinformatics D.Sc student)
Laboratório de Genética Bioquímica
Universidade Federal de Minas Gerais
Tel: +55 31 3409-2628
CV: http://lattes.cnpq.br/8808643075395963

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