Hi,

 

I wonder if anyone has used labRow function with success in
KEGG2heatmap? I want to have GeneSymbols instead of ProbeIds on a
heatmap. I manage to get the heatmap with GeneSymbols by using mget
function however they were missmapped and didn't match the probeIds. 

 

geneSymbl <- mget(featureNames(CRCsubset_map_Q_unique),
envir=AB1700sp2SYMBOL)

 

KEGG2heatmap("05210", CRCsubset_map_Q_unique, data = "AB1700sp2", 

cexRow=0.6, cexCol=1, col=map_colour, xlab="Samples", ylab="Genes",
labRow=geneSymbl, 

ColSideColors=colr,main=paste("KEGG pathway:Colorectal cancer") )

 

Is there anyway that I can heatmap&geneSymbols without getting back to
kegg pathway, making kegg-eset and using labRow in heatmap2? Thanks for
any help.

 

Lina


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