Hi Steve,
Thank you for your quick response.

If you can share your file with me, that would be fantastics.

Thanks again,
Shirley

On Thu, Aug 20, 2009 at 11:41 AM, Steve Lianoglou <
mailinglist.honeypot@gmail.com> wrote:

> Hi Shirley,
>
>
> On Aug 20, 2009, at 11:21 AM, shirley zhang wrote:
>
>  Dear List,
>> I am working on a next generation sequencing data set from Human. I am
>> wondering whether there is a public exon-exon junction library available.
>>
>
> I'm not sure if I get what you mean, but perhaps this might help.
>
> I recently got ERANGE[1] working for some RNA-seq analysis. Part of the
> preliminary steps is to creata a fasta file that has sequences spanning
> known exon/exon junctions.
>
> If you want to make such a file, read the instructions in the
> README.build-rds.txt file of the ERANGE package.
>
> That having been said, I've built such a file for 32bp reads against the
> human hg19/NCBI37 genome which I can give you, if you like (with the
> disclaimer of not being held responsible if that file is actually wrong).
>
> -steve
>
> ERANGE: http://woldlab.caltech.edu/rnaseq/
>
> --
> Steve Lianoglou
> Graduate Student: Computational Systems Biology
>  |  Memorial Sloan-Kettering Cancer Center
>  |  Weill Medical College of Cornell University
> Contact Info: http://cbio.mskcc.org/~lianos/contact
>
>


-- 
Xiaoling (Shirley) Zhang

Ph.D. Candidate in Bioinformatics
Boston University, Boston, MA
Tel: (857) 233-9862
Email: zhangxl@bu.edu

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