Thanks. I am planing to use ERANGE and TopHat.  Your file
will definitely help, especially it is against the human hg19/NCBI37 genome.
Thanks again,
Shirley

On Thu, Aug 20, 2009 at 11:52 AM, Steve Lianoglou <
mailinglist.honeypot@gmail.com> wrote:

> Hi,
>
> On Aug 20, 2009, at 11:46 AM, shirley zhang wrote:
>
>  Hi Steve,
>>
>> Thank you for your quick response.
>>
>> If you can share your file with me, that would be fantastics.
>>
>
> You can get the file here:
>
> http://cbio.mskcc.org/~lianos/files/hg19_splices.fa.zip
>
> That was created with the hg19/masked fasta files. The leading and trailing
> NN-dinucleotides from each sequence were inserted by ERANGE.
>
> I'm actually not sure that this file will help you directly unless you're
> planning to use ERANGE's pipeline, though.
>
> -steve
>
>
> --
> Steve Lianoglou
> Graduate Student: Computational Systems Biology
>  |  Memorial Sloan-Kettering Cancer Center
>  |  Weill Medical College of Cornell University
> Contact Info: http://cbio.mskcc.org/~lianos/contact
>
>


-- 
Xiaoling (Shirley) Zhang

Ph.D. Candidate in Bioinformatics
Boston University, Boston, MA
Tel: (857) 233-9862
Email: zhangxl@bu.edu

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