Hi Simon,

I guess so as to avoid confusion, maybe this should go to the Bioc-Devel
list? I think that AnnotationDbi works for the current release version of
Bioc. But I am sure that Marc will appreciate the update anyhow.

Cheers,
--tony

On Thu, Aug 6, 2009 at 7:42 AM, Simon Anders <anders@ebi.ac.uk> wrote:

> Hi
>
> I've just tried to update my Bioc 2.5 installation (on Ubuntu Intrepid
> x86_64) to the current packages, and AnnotationDbi 1.7.8 fails to install:
>
> ---8<---
> * installing *source* package ‘AnnotationDbi’ ...
> [...]
> Creating a new generic function for "mget" in "AnnotationDbi"
> Creating a new generic function for "eapply" in "AnnotationDbi"
> Error in rematchDefinition(definition, fdef, mnames, fnames, signature) :
>  arguments after '...' in the generic (all.names) must appear in the
> method, in the same place at the end of the argument list
> Error : unable to load R code in package 'AnnotationDbi'
> ---8<---
>
> Note that the build cluster currently reports the same error message on
> gewurz and liverpool (the Windows machines), so I suppose you are aware of
> the problem. However, I wanted to add that I observe the same error on my
> Linux box too, even though wilson2 seems to see no problem.
>
> The error occurred with v1.7.8; v1.7.7 is fine.
>
> Cheers
>  Simon
>
> > sessionInfo()
> R version 2.10.0 Under development (unstable) (2009-06-26 r48838)
> x86_64-unknown-linux-gnu
>
> locale:
>  [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C
>  [3] LC_TIME=en_GB.UTF-8        LC_COLLATE=en_GB.UTF-8
>  [5] LC_MONETARY=C              LC_MESSAGES=en_GB.UTF-8
>  [7] LC_PAPER=en_GB.UTF-8       LC_NAME=C
>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> loaded via a namespace (and not attached):
> [1] tools_2.10.0
>
>
>
> +---
> | Dr. Simon Anders, Dipl.-Phys.
> | European Molecular Biology Laboratory (EMBL), Heidelberg
> | preferred (permanent) e-mail: sanders@fs.tum.de
>
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