On Wed, Aug 5, 2009 at 5:29 PM, Peng Yu <pengyu.ut@gmail.com> wrote:

>
> Would you please let me know what is the command to check the BioC version?
>


There is not such a command.  Each package has a version associated with the
bioconductor release.  That is why we constantly harp on people to post
sessionInfo() so that we can check if the versions of the various packages
are meant to work together.

Sean



>
> Regards,
> Peng
>
> On Wed, Aug 5, 2009 at 12:02 PM, Patrick Aboyoun<paboyoun@fhcrc.org>
> wrote:
> > Peng,
> > In addition to the versioning of R and Bioconductor packages, we also
> > version the biocLite.R script on biocondunctor.org
> >
> > "biocinstall version 2.4.11" because we sometimes change the behavior of
> the
> > functions in that script, such as which BioC packages are recommended, so
> > providing the printout that you gave is ideal for us to pinpoint problems
> > users encounter.
> >
> >
> > Patrick
> >
> >
> > Sean Davis wrote:
> >>
> >> On Wed, Aug 5, 2009 at 12:14 PM, Peng Yu <pengyu.ut@gmail.com> wrote:
> >>
> >>
> >>>
> >>> Hi,
> >>>
> >>> I got the following message. I don't understand what it means. Can
> >>> somebody let me know its meaning?
> >>>
> >>>
> >>>>
> >>>>    source("http://bioconductor.org/biocLite.R")
> >>>>    biocLite("pd.mogene.1.0.st.v1")
> >>>>
> >>>
> >>> Running biocinstall version 2.4.11 with R version 2.9.0
> >>> Your version of R requires version 2.4 of Bioconductor.
> >>>
> >>>
> >>
> >> Version 2.4 is the current release of bioconductor.  biocLite() will do
> >> the
> >> right thing, generally.  What you want to try to avoid is mixing
> >> bioconductor versions together.  If you use biocLite() all the time, you
> >> shouldn't have any problems.
> >>
> >> Sean
> >>
> >>        [[alternative HTML version deleted]]
> >>
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> >>
> >
> >
>
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