Dear Peng,

puff, I would not know a good primer for design issues and introduction to
affy-chips, there is bits of it in the "Statistical Algorithms Description
Document" on the page I have sent you the link for... Other than that, you'd
have to browse the Affymetrix pages?

Best, Sam

2009/8/4 Peng Yu <pengyu.ut@gmail.com>

> Hi Sam,
>
> I have seen the following page that you pointed to me before I submit
> the original. But I don't know which one gives the basic description
> of Affy GeneChip Arrays.
> http://www.affymetrix.com/support/technical/whitepapers.affx
>
> The affy primer document says
> "We assume that the reader is already familiar with oligonucleotide
> arrays and with the
> design of the A ymetrix GeneChip arrays. If you are not, we recommend
> the Appendix
> of the A ymetrix MAS manual A ymetrix (1999, 2001)."
>
>
> http://www.bioconductor.org/packages/release/bioc/vignettes/affy/inst/doc/affy.pdf
>
> It seems that the document the affy primer refers is outdated. Would
> you please let me know which document I should read?
>
> Regards,
> Peng
>
> On Tue, Aug 4, 2009 at 11:21 AM, Samuel Wuest<wuests@tcd.ie> wrote:
> > Dear Peng,
> >
> > check the Affy-Homepage, I think that's what you are looking for:
> >
> > http://www.affymetrix.com/support/technical/whitepapers.affx
> >
> > You'll find several technical manuals on this page, or alternatively on
> the
> > "manuals"-page... Check for example Statistical Algorithms Description
> > Document (pdf, 216 KB) for an algorithm description.
> >
> > Please note that for some manuals you have to log-in, however, setting up
> an
> > account is for free.
> >
> > Cheers, Sam
> >
> >
> > 2009/8/4 Peng Yu <pengyu.ut@gmail.com>
> >>
> >> Hi,
> >>
> >> The following pdf file mentioned the A ymetrix MAS manual (the first
> >> and the second reference). But I don't find these manuals online. Can
> >> somebody let me know how I can find it?
> >>
> >>
> >>
> http://www.bioconductor.org/packages/release/bioc/vignettes/affy/inst/doc/affy.pdf
> >>
> >> Regards,
> >> Peng
> >>
> >> _______________________________________________
> >> Bioconductor mailing list
> >> Bioconductor@stat.math.ethz.ch
> >> https://stat.ethz.ch/mailman/listinfo/bioconductor
> >> Search the archives:
> >> http://news.gmane.org/gmane.science.biology.informatics.conductor
> >>
> >
> >
>
>

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