Dear Bioconductor

 

if I had a 2 way ANOVA to analyse, say gender and treatment, where treatment had 3 or more levels (eg placebo, drug1 and drug2)

would there be anu way using the limma output object of obtaining the overall p-value for an effect of treatment (as you'd get from an ANOVA table as an F statistic with 2 df )- or can we only obtain p-values for contrasts eg each drug vs placebo

 

many thanks in advance

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