On Mon, Jul 13, 2009 at 1:14 PM, Philippe Thomas <
philippe.thomas.tcri@gmail.com> wrote:

> Dear all,
>
> I want to parse BAR-files from Affymetrix.
> http://www.affymetrix.com/support/developer/powertools/changelog/gcos-agcc/bar.html
>
> Crawling through the internet I often read that affxparser is able to read
> BAR-files. However, I don't find any evidence for that in the Vignette.
>

I didn't see BAR file parsing functionality in the affxparser package (but
it is in the package description, I agree).

You can, however, write a pretty simple little parser for this format using
simple R commands.  Open the file in binary mode and use readBin, stepping
through the format description.  It is not fast, but it works OK.

Sean

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