Two days ago I managed to write a crude script to get 3UTR sequences that worked fine. I sent you the extracted sequences and attached the script.
I have been working on improving my script and been unable to get 3UTR sequence any more.
Right now I ran the scripts that worked two days ago and realized it does not work any longer .... I am shocked .....

I keep getting the following error message:

Error in getBM(c(seqType, type), filters = type, values = id, mart = mart,  : 
  Query ERROR: caught BioMart::Exception: non-BioMart die(): DBD::mysql::st execute failed: File './sequence_mart_54/hsapiens_genomic_sequence__dna_chunks__main.MYD' not found (Errcode: 27) at /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/Dataset/GenomicSequence/DNAAdaptor.pm line 209.


I would appreciate some feedback.
Thank you in advance for your attention.
Maura



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