Hi Torsten,

thank you very much for information you provided.
i am learning~~

Best Wishes.

On Fri, Jun 26, 2009 at 4:45 PM, Torsten Waldminghaus <
Torsten.Waldminghaus@rr-research.no> wrote:

> I found these papers helpful as starting point:
>
> http://www.biomedcentral.com/1471-2105/8/221
> http://bioinformatics.oxfordjournals.org/cgi/content/full/25/7/954
> http://www.biomedcentral.com/1471-2105/8/219
>
> However, I use the limma package from R to get the data in shape
> (background subtraction, normalization). Than I make a gff file out of
> the data and use CoCAS to detect the peaks. This might not be the best
> way (any better suggestions are welcome) since I'm as well a beginner
> rather than an expert.
>
> Good luck,
>
> Torsten
>
> -----Original Message-----
> From: bioconductor-bounces@stat.math.ethz.ch
> [mailto:bioconductor-bounces@stat.math.ethz.ch] On Behalf Of Daofeng Li
> Sent: 26. juni 2009 10:33
> To: bioconductor@stat.math.ethz.ch
> Subject: [BioC] help on analysis ChiP-chip data of affyymetrix
> Arabidopsistilling array
>
> Dear list members,
>
> i am totally new to this area
> can anyone recommend some material for me to study?
> Thanks in advance.
>
> Best Regards.
>
> --
> Daofeng Li,PhD Candidate
> China Agricultural University
>
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>
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-- 
Daofeng Li,PhD Candidate
China Agricultural University

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