Hi steve,
Thank you for information~~
i had read some material mentioned above
is there any package specillaly desighed to analysis ChIP along with tilling
array of Affymetrix company?

Best Regards.
On Fri, Jun 26, 2009 at 9:03 PM, Steve Lianoglou <
mailinglist.honeypot@gmail.com> wrote:

> Hi,
>
> On Jun 26, 2009, at 8:19 AM, Daofeng Li wrote:
>
> Hi Torsten,
>>
>> thank you very much for information you provided.
>> i am learning~~
>>
>> Best Wishes.
>>
>> On Fri, Jun 26, 2009 at 4:45 PM, Torsten Waldminghaus <
>> Torsten.Waldminghaus@rr-research.no> wrote:
>>
>> I found these papers helpful as starting point:
>>>
>>> http://www.biomedcentral.com/1471-2105/8/221
>>> http://bioinformatics.oxfordjournals.org/cgi/content/full/25/7/954
>>> http://www.biomedcentral.com/1471-2105/8/219
>>>
>>
>
> In addition to this, you might want to try looking at MAT:
> Homepage: http://liulab.dfci.harvard.edu/MAT/
> Publication: http://www.ncbi.nlm.nih.gov/pubmed/16895995?dopt=Citation
>
> The original software has been ported from Java and is now maintained in
> Python.
>
> I believe w/ bioconductor 2.4 came an rMAT package, which is an
> implementation of this software in R if you'd like to try it that way:
> http://www.bioconductor.org/packages/release/bioc/html/rMAT.html
>
> Hope that helps,
> -steve
>
> --
> Steve Lianoglou
> Graduate Student: Physiology, Biophysics and Systems Biology
> Weill Medical College of Cornell University
>
> Contact Info: http://cbio.mskcc.org/~lianos
>
>
>
>


-- 
Daofeng Li,PhD Candidate
China Agricultural University

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