

Hi

I am using lumi to analyze my Illumina data. Previously I have used BeadStudio but we have now gotten GenomeStudio. When I am using lumiR to read in my data file I get a warning/error message telling me that the data might not be BeadStudio output. 

I still have BeadStudio and the same data from this program worked. Are there any planes to make lumi able to use both BeadStudo and GenomStudio data? 

I found the error to be a bit strange since I can not see any differences between the files when I open them, but it can be something not visible. 

My session info:

> sessionInfo()
R version 2.9.0 (2009-04-17) 
i386-pc-mingw32 

locale:
LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United Kingdom.1252;LC_MONETARY=English_United Kingdom.1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] illuminaHumanv3BeadID.db_1.2.0 annaffy_1.16.0                 KEGG.db_2.2.11                 GO.db_2.2.11                  
 [5] statmod_1.4.0                  xtable_1.5-5                   RColorBrewer_1.0-2             limma_2.18.0                  
 [9] lumi_1.10.1                    RSQLite_0.7-1                  DBI_0.2-4                      preprocessCore_1.6.0          
[13] mgcv_1.5-2                     affy_1.22.0                    annotate_1.22.0                AnnotationDbi_1.6.0           
[17] Biobase_2.4.1                 

loaded via a namespace (and not attached):
[1] affyio_1.12.0   grid_2.9.0      lattice_0.17-22 nlme_3.1-90     tools_2.9.0    
>

Regards,
Ingrid


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