Hello list,

In our lab we are trying to implement the GOstat package in microarray data
analysis of UHN 12K chips.
This is the model of our output file after analysis

"Row"    "Col"    "ProbeUID"    "ControlType"    "ProbeName"
"GeneName"    "SystematicName"    "logFC"    "AveExpr"    "t"
"P.Value"    "adj.P.Val"    "B"
"4489"    79    25    4792    0    "UHNhscpg0007521"    "CASP9"    NA
2.35039516877896    6.66036864568585    6.34745569917956
0.00285473198138345    0.996108545606581    -4.49478792330771
"5004"    79    60    5339    0    "UHNhscpg0007485"    "KLK2"    NA
2.59112634052802    6.86770306089859    6.27908218635525
0.00297451703773736    0.996108545606581    -4.49505386268111

I have tried differant parameters from the output file for proper analysis
in GOstat but none of them worked, it will be very helpfull if anyone can
suggest me the appropriate input parameters for  the package , taking into
consideration the above model of data.

A.Ashwin
Department of Biotechnology
Manipal Life Science Center
Manipal University
INDIA

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