Hello,

I get the following errors when I try to install flowClust on Mac OS X  
10.5.6 with R 2.8.
I installed gsl using Macports (located in /opt/loca/lib) and set my  
library path accordingly

noah@insight~> echo $LD_LIBRARY_PATH
/opt/local/lib:

Any advice?

Best,
Noah

Installing directly from bioconductor:
 > source("http://bioconductor.org/biocLite.R")
 >     biocLite("flowClust")
Running biocinstall version 2.3.13 with R version 2.8.0
Your version of R requires version 2.3 of Bioconductor.
trying URL 'http://bioconductor.org/packages/2.3/bioc/bin/macosx/universal/contrib/2.8/flowClust_1.8.1.tgz'
Content type 'application/x-gzip' length 423564 bytes (413 Kb)
opened URL
==================================================
downloaded 413 Kb
The downloaded packages are in
	/var/folders/vO/vOrIx2YWEoG2aXlhfq7ZpE+++TI/-Tmp-//RtmpLadWOr/ 
downloaded_packages
 > library(flowClust)
Error in dyn.load(file, DLLpath = DLLpath, ...) :
   unable to load shared library '/Library/Frameworks/R.framework/ 
Resources/library/flowClust/libs/i386/flowClust.so':
   dlopen(/Library/Frameworks/R.framework/Resources/library/flowClust/ 
libs/i386/flowClust.so, 6): Library not loaded: /usr/local/lib/libgsl. 
0.dylib
   Referenced from: /Library/Frameworks/R.framework/Resources/library/ 
flowClust/libs/i386/flowClust.so
   Reason: image not found
In addition: Warning message:
package 'flowClust' was built under R version 2.8.1
Error: package/namespace load failed for 'flowClust'

Trying to install from source (note: I had to modify the Makevars file  
to point to my gsl installation):
noah@insight~/Desktop/installfail> R CMD BUILD flowClust/
* checking for file 'flowClust/DESCRIPTION' ... OK
* preparing 'flowClust':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running cleanup
* installing the package to re-build vignettes
* Installing *source* package 'flowClust' ...
checking for gcc... gcc -arch i386 -std=gnu99
checking for C compiler default output file name... rm: a.out.dSYM: is  
a directory
a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch i386 -std=gnu99 accepts -g... yes
checking for gcc -arch i386 -std=gnu99 option to accept ISO C89...  
none needed
checking for gsl-config... /opt/local/bin/gsl-config
checking for GSL - version >= 1.6... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/ 
include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/ 
opt/local/include -I/usr/local/include    -fPIC  -g -O2 -c BoxCox.c -o  
BoxCox.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/ 
include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/ 
opt/local/include -I/usr/local/include    -fPIC  -g -O2 -c flowClust.c  
-o flowClust.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/ 
include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/ 
opt/local/include -I/usr/local/include    -fPIC  -g -O2 -c ranMVNT.c - 
o ranMVNT.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names  
-mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module - 
multiply_defined suppress -L/usr/local/lib -o flowClust.so BoxCox.o  
flowClust.o ranMVNT.o -L/opt/local/lib  -F/Library/Frameworks/ 
R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Loading required package: mnormt
Loading required package: mclust
by using mclust, you accept the license agreement in the LICENSE file
and at http://www.stat.washington.edu/mclust/license.txt
Loading required package: ellipse
Loading required package: flowCore
Loading required package: rrcov
Loading required package: robustbase
Scalable Robust Estimators with High Breakdown Point (version 0.4-07)
Loading required package: feature
Loading required package: KernSmooth
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

   Vignettes contain introductory material. To view, type
   'openVignette()'. To cite Bioconductor, see
   'citation("Biobase")' and for packages 'citation(pkgname)'.


Attaching package: 'flowCore'


	The following object(s) are masked from package:stats :

	 alias,
	 filter

** help
  >>> Building/Updating help pages for package 'flowClust'
      Formats: text html latex example
   Map                               text    html    latex   example
   SimulateMixture                   text    html    latex   example
   Subset                            text    html    latex
   box                               text    html    latex   example
   density                           text    html    latex   example
   dmvt                              text    html    latex
   flowClust-internal                text    html    latex
   flowClust-package                 text    html    latex
   flowClust                         text    html    latex   example
   hist                              text    html    latex   example
   plot.flowClust                    text    html    latex   example
   plot.flowCore                     text    html    latex
   plot.flowDens                     text    html    latex
   posterior                         text    html    latex   example
   rbox                              text    html    latex
   rituximab                         text    html    latex
   ruleOutliers                      text    html    latex   example
   show.flowClust                    text    html    latex
   show.tmixFilter                   text    html    latex
   split                             text    html    latex
   summary                           text    html    latex
   tmixFilter                        text    html    latex   example
** building package indices ...
* DONE (flowClust)
* creating vignettes ... ERROR
Loading required package: mnormt
Loading required package: mclust
Loading required package: ellipse
Loading required package: flowCore
Loading required package: rrcov
Loading required package: robustbase
Loading required package: feature
Loading required package: KernSmooth
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: Biobase

Welcome to Bioconductor

   Vignettes contain introductory material. To view, type
   'openVignette()'. To cite Bioconductor, see
   'citation("Biobase")' and for packages 'citation(pkgname)'.


Attaching package: 'flowCore'


	The following object(s) are masked from package:stats :

	 alias,
	 filter

Error in dyn.load(file, DLLpath = DLLpath, ...) :
   unable to load shared library '/var/folders/vO/ 
vOrIx2YWEoG2aXlhfq7ZpE+++TI/-Tmp-//Rinst2151656065/flowClust/libs/i386/ 
flowClust.so':
   dlopen(/var/folders/vO/vOrIx2YWEoG2aXlhfq7ZpE+++TI/-Tmp-// 
Rinst2151656065/flowClust/libs/i386/flowClust.so, 6): Symbol not  
found: _gsl_root_fsolver_brent
   Referenced from: /var/folders/vO/vOrIx2YWEoG2aXlhfq7ZpE+++TI/-Tmp-// 
Rinst2151656065/flowClust/libs/i386/flowClust.so
   Expected in: dynamic lookup


Error: processing vignette 'flowClust.Rnw' failed with diagnostics:
  chunk 1 (label=stage0)
Error : package/namespace load failed for 'flowClust'
Execution halted



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