try biocLite("Ruuid") -- there must be a dependency missing somewhere that
prevents
automatic success, and we will try to fix it, but for now a manual install
of Ruuid should
do it.

On Thu, Apr 30, 2009 at 6:49 AM, David Edwards <David.Edwards@agrsci.dk>wrote:

> Dear list
>
> I am attempting to install the library hmyriB36 on a windows XP machine.
> The following occurs
>
> > source("http://bioconductor.org/biocLite.R")
> Warning messages:
> 1: In safeSource() : Redefining 'biocinstall'
> 2: In safeSource() : Redefining 'biocinstallPkgGroups'
> 3: In safeSource() : Redefining 'biocinstallRepos'
> >     biocLite("hmyriB36")
> Running biocinstall version 2.4.10 with R version 2.9.0
> Your version of R requires version 2.4 of Bioconductor.
> Warning: unable to access index for repository
> http://brainarray.mbni.med.umich.edu/bioc/bin/windows/contrib/2.9
> trying URL '
> http://bioconductor.org/packages/2.4/data/experiment/bin/windows/contrib/2.9/hmyriB36_0.99.0.zip
> '
> Content type 'application/zip' length 93084013 bytes (88.8 Mb)
> opened URL
> downloaded 88.8 Mb
>
> package 'hmyriB36' successfully unpacked and MD5 sums checked
>
> The downloaded packages are in
>        C:\Documents and Settings\daed\Local
> Settings\Temp\RtmpbiJFRg\downloaded_packages
> updating HTML package descriptions
> > library(hmyriB36)
> Loading required package: GGBase
> Loading required package: Biobase
>
> Welcome to Bioconductor
>
>  Vignettes contain introductory material. To view, type
>  'openVignette()'. To cite Bioconductor, see
>  'citation("Biobase")' and for packages 'citation(pkgname)'.
>
> Loading required package: GSEABase
> Loading required package: AnnotationDbi
> Loading required package: annotate
> Loading required package: graph
> Loading required package: snpMatrix
> Loading required package: survival
> Loading required package: splines
> Loading required package: RSQLite
> Loading required package: DBI
> Error in loadNamespace(name) : there is no package called 'Ruuid'
> Error in as.environment(pos) :
>  no item called "newtable" on the search list
> Error: package 'GGBase' could not be loaded
> > data(hmyriB36)
> Warning message:
> In data(hmyriB36) : data set 'hmyriB36' not found
>
> What should I do? Any help would be gratefully received.
>
> BR David Edwards
>
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>



-- 
Vincent Carey, PhD
Biostatistics, Channing Lab
617 525 2265

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