Dear Martin and Vincent,

 

Thank you very much! The "XML" update solved my problem.

 

Best regards

Galina

 

________________________________

From: Vincent Carey [mailto:stvjc@channing.harvard.edu] 
Sent: Tuesday, April 28, 2009 12:05 PM
To: Glazko, Galina
Cc: bioconductor@stat.math.ethz.ch
Subject: Re: [BioC] KEGGSOAP problem



your XML package installation is flawed.

According to omegahat.org

There is also a Windows version available from the Omegahat repository.
Use 

install.packages("XML", repos = "http://www.omegahat.org/R")






If that does not solve your problem let us know.


On Tue, Apr 28, 2009 at 11:31 AM, Glazko, Galina
<Galina_Glazko@urmc.rochester.edu> wrote:

Dear all,



Last week I updated R to the version 2.9.0 and Bioconductor  to  the
version 2.4

I am trying to install KEGGSOAP now but something strange happens:



> biocLite('KEGGSOAP')
Running biocinstall version 2.4.10 with R version 2.9.0
Your version of R requires version 2.4 of Bioconductor.
Warning: unable to access index for repository
http://brainarray.mbni.med.umich.edu/bioc/bin/windows/contrib/2.9
trying URL
'http://bioconductor.org/packages/2.4/bioc/bin/windows/contrib/2.9/KEGGS
OAP_1.18.0.zip'
Content type 'application/zip' length 104952 bytes (102 Kb)
opened URL
downloaded 102 Kb

package 'KEGGSOAP' successfully unpacked and MD5 sums checked

The downloaded packages are in
       C:\Documents and Settings\Galina\Local
Settings\Temp\RtmpIMZxc6\downloaded_packages
updating HTML package descriptions



- so  the installation seems to be OK?



> library('KEGGSOAP')
Error in inDL(x, as.logical(local), as.logical(now), ...) :
 unable to load shared library
'C:/PROGRA~1/R/R-29~1.0/library/XML/libs/XML.dll':
 LoadLibrary failure:  The specified module could not be found.


Error : .onLoad failed in 'loadNamespace' for 'XML'
Error: package/namespace load failed for 'KEGGSOAP'



Could someone point what is wrong?

Thank you!



Best regards

Galina



> sessionInfo()
R version 2.9.0 (2009-04-17)
i386-pc-mingw32






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-- 
Vincent Carey, PhD
Biostatistics, Channing Lab
617 525 2265


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