Hi List,

I've got an Affy timecourse experiment with 8 timepoints and I'm interested
in finding which transcription factors (TF) are controling the expression of
a particular gene (hk1).

I don't know if there's any tool in Bionconductor that might allow me to do
this? Or is there a freely accessible database that will tell me which TFs
are know to control this gene, or even a tool that could infer such a
result.

I though it might be useful to look at genes that have a strong correlation
in expression profile with hk1 over the 8 timepoints and compare what TFs
are common to all (or many) of those genes? But again I'm not sure if or
where the TF information is available?

Regards,

Peter.

-- 
Dr. Peter Smith
Dept. of Biostatistics
National University of Ireland
Maynooth

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