Hi,

Are there any packages that will aid in the analysis of genes related to a particular PFAM family? For example, the GOstats, KEGGSOAP package help in analysis (e.g. visualizing where individual genes may be mapped in the pathway) of genes w.r.t. pathways. Are there any similar packages available for PFAM (apart from PFAM.db)?

Apart from doing a hyperGTest (GOstats) for PFAM, are there any other analysis tools for it (PFAM)? Or any other suggestions?

thanks,

Paul



      
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