On Wed, Apr 8, 2009 at 6:14 PM, Junjie Guo <guojj@jhmi.edu> wrote:

> Hi, I'm a grad student at Johns Hopkins Univ. We are trying to analyze our
> affymetrix Exon Array 1.0 data using affylmGUI. But it seems bioconductor
> does not have the CDF file for this array. Do you have any advice for me?
>
> Information of this microarray:
>
>
> http://www.affymetrix.com/products_services/arrays/specific/mouse_exon.affx#1_4
>

Hi, Junjie.  I do not think that affylmGUI will handle the exon arrays
(someone will correct me if I am wrong, I am sure).  You'll need to use
something other than the affy package.  See here for details:

http://bioconductor.org/docs/workflows/oligoarrays/

There is not a GUI for any of the other packages.

Sean

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