Hello.

I'm trying to build a annotation package for a custom printed array.

I'm running the code.....:
library(AnnotationDbi)
setwd("/Users/marcusgry/Desktop/bygga mus.annot")
Infile <- "/Users/marcusgry/Desktop/bygga mus.annot/alla.gb.txt"
OutDir <- "/Users/marcusgry/Desktop/bygga mus.annot"

makeMOUSECHIP_DB(affy=FALSE, prefix="KTH.mmOligo", fileName=Infile,  
baseMapType="gb",outputDir = OutDir,version="1.0.1",manufacturer =  
"KTH",chipName = "KTH Whole Genome Oligo Chip",manufacturerUrl = "http://www.ktharray.com 
")


And the response is:

"baseMapType is gb or gbNRef
Error in sqliteExecStatement(con, statement, bind.data) :
   RS-DBI driver: (error in statement: no such table: src.accession)"

The input file is a file which looks like:

Mouse_v401D01	M28821;BC145741
Mouse_v401H01	 
AK148357 
;AK014619 
;BC079678 
;X51743 
;D00439 
;M26729 
;M24560 
;M20234 
;X12782 
;D00131;D00440;AY012001;AK148432;AK148172;AK148341;CH466543;AY526904
Mouse_v401L01	AK010225;X99251

...and so forth.

I am using macOSX, version 10.5.6, and R-version 2.8.1. The  
AnnotationDbi is version 1.4.2.


Do anyone know what the problem might be?

I would really appreciate all the help that I can get.


Yours sincerely

Marcus



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