Dear All,

I have data from illumina  experiments (one colora data) (48803 rows, 120
colones (40 colones for each  treatment) ) and I am looking for the genes
differentially expressed by treatment

could you tell me please, if i can use the package limma to apply the
differential expression methods (lmFit,eBayes and topGene) or other method
appropriate to my data ( for instance ANOVA)?


Best regards

ML

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