Hello,

There seems to be a problem in retrieving annotation from the chip  
"affy_huex_1_0_st_v2".

 >library(biomaRt)
 >ensembl=useMart("ensembl",dataset="hsapiens_gene_ensembl")

Checking attributes and filters ... ok

#check if "affy_huex_1_0_st_v2" is a valid attribute
 >attributes=listAttributes(ensembl)
 >grep("affy_huex_1_0_st_v2",attributes[,1])

[1] 13

#collect data
 >data=getBM(attributes="affy_huex_1_0_st_v2", mart=ensembl)

Error in postForm(paste(martHost(mart), "?", sep = ""), query =  
xmlQuery) :
   transfer closed with outstanding read data remaining

 > sessionInfo()
R version 2.8.1 (2008-12-22)
i386-apple-darwin8.11.1

locale:
en_GB.UTF-8/en_GB.UTF-8/C/C/en_GB.UTF-8/en_GB.UTF-8

attached base packages:
[1] stats     graphics  grDevices datasets  tools     utils     methods
[8] base

other attached packages:
[1] biomaRt_1.16.0    R.utils_1.1.1     R.oo_1.4.6         
R.methodsS3_1.0.3
[5] Biobase_2.2.2

loaded via a namespace (and not attached):
[1] RCurl_0.94-1 XML_2.3-0

Thank you for your help,

Nenad

Nenad Bartonicek
European Bioinformatics Institute
Wellcome Trust Genome Campus
Hinxton
Cambridge
CB10 1SD
United Kingdom
tel: +44-755-435-9057
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